| David Fehr, Joanna-Elzbieta Handzlik, Manu, and Yen Lee Loh (2019) Classification-based inference of dynamical models of gene regulatory networks. G3 Genes|Genomes|Genetics 9(12): 4183–4195 link pdf |
| Andrea Repele and Manu (2019) Robust normalization of Luciferase reporter data. Methods and Protocols, 2(3): 62 link pdf |
| Andrea Repele, Shawn Krueger, Tapas Bhattacharyya, Michelle Y Tuineau, and Manu (2019) The regulatory control of Cebpa enhancers and silencers in the myeloid and red-blood cell lineages. PLoS One, 14(6): e0217580 link pdf |
| E. Bertolino, J. Reinitz, and Manu (2016) The analysis of novel distal Cebpa enhancers and silencers using a transcriptional model reveals the complex regulatory logic of hematopoietic lineage specification. Developmental Biology, 413: 128–141 link pdf |
| H. Wu, Manu , R. Jiao, and J. Ma (2015) Temporal and spatial dynamics of scaling-specific features of a gene regulatory network in Drosophila. Nature Communications, 6: 10031 link |
| Manu, M. Z. Ludwig, and M. Kreitman (2013) Sex-specific pattern formation during early Drosophila development. Genetics, 194(1): 163–73 link pdf |
| M. Z. Ludwig, Manu, R. Kittler, K. P. White, and M. Kreitman (2011) Consequences of eukaryotic enhancer architecture for gene expression dynamics, development, and fitness. PLoS Genetics, 7: e1002364 link pdf |
| Manu, S. Surkova, A. V. Spirov, V. Gursky, H. Janssens, A. Kim, O. Radulescu, C. E. Vanario-Alonso, D. H. Sharp, M. Samsonova, and J. Reinitz (2009) Canalization of gene expression in the Drosophila blastoderm by gap gene cross regulation. PLoS Biology, 7: e1000049 link pdf |
| Manu, S. Surkova, A. V. Spirov, V. Gursky, H. Janssens, A. Kim, O. Radulescu, C. E. Vanario-Alonso, D. H. Sharp, M. Samsonova, and J. Reinitz (2009) Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors. PLoS Computational Biology, 5: e1000303 link pdf |
| J. Jaeger, S. Surkova, M. Blagov, H. Janssens, D. Kosman, K. N. Kozlov, Manu, E. Myasnikova, C. E. Vanario- Alonso, M. Samsonova, D. H. Sharp, and J. Reinitz (2004) Dynamic control of positional information in the early Drosophila embryo. Nature, 430: 368–371 link |